Hello Dear friends i trying to install therion on mac , But when type Macs-MacBook-Pro:therion yonesshariatmadari$ sudo make install then see the following error: first see this error: couldn't understand kern.osversion `14.0.0' Undefined symbols: "std::__1::basic_ostream<char, std::__1::char_traits<char> >::flush()", referenced from: find_scrap(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >)in thconvert.o after a second this: ld: symbol(s) not found collect2: ld returned 1 exit status make: *** [therion] Error 1 Macs-MacBook-Pro:therion yonesshariatmadari$ what should i do? please help me thank you
30. 1. 2015 v 12:05, Yones Shariatmadari <yonessh2@gmail.com>:
what should i do? please help me
Hi, try to use HomeBrew instalation: - download and install HomeBrew - http://brew.sh - in terminal: brew install therion m.
*Hi* *i use homebrew , it is very good for checking but that error is in terminal !!!* *problem not solve.* *please check this:* Macs-MacBook-Pro:therion yonesshariatmadari$ brew install therion Error: No available formula for therion Searching formulae... Searching taps... On Fri, Jan 30, 2015 at 3:37 PM, Martin Sluka <martinsluka@mac.com> wrote:
30. 1. 2015 v 12:05, Yones Shariatmadari <yonessh2@gmail.com>:
what should i do? please help me
Hi,
try to use HomeBrew instalation:
- download and install HomeBrew - http://brew.sh
- in terminal: brew install therion
m.
_______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) <http://pms.sbmu.ac.ir> Shahid Beheshti University of Medical Sciences (S.B.M.U) <http://www.sbmu.ac.ir/> Tehran, Iran
It is on my computer (OSX 10.8.5): as written in wiki: brew tap homebrew/science brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.... m.s. 30. 1. 2015 v 22:23, Yones Shariatmadari <yonessh2@gmail.com>:
Hi
i use homebrew , it is very good for checking but that error is in terminal !!! problem not solve.
please check this:
Macs-MacBook-Pro:therion yonesshariatmadari$ brew install therion Error: No available formula for therion Searching formulae... Searching taps...
On Fri, Jan 30, 2015 at 3:37 PM, Martin Sluka <martinsluka@mac.com> wrote:
30. 1. 2015 v 12:05, Yones Shariatmadari <yonessh2@gmail.com>:
what should i do? please help me
Hi,
try to use HomeBrew instalation:
- download and install HomeBrew - http://brew.sh
- in terminal: brew install therion
m.
_______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) Shahid Beheshti University of Medical Sciences (S.B.M.U) Tehran, Iran _______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
Hi Friends thank you for your interest my friends. but i have an error in installing therion. i use mac os 10.10.1 ! type the following brew in terminal : the result is : Macs-MacBook-Pro:~ yonesshariatmadari$ brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.... ######################################################################## 100.0% Warning: You have an outdated version of /usr/bin/install_name_tool installed. This will cause binary package installations to fail. This can happen if you install osx-gcc-installer or RailsInstaller. To restore it, you must reinstall OS X or restore the binary from the OS packages. *==>** Installing dependencies for therion: **libpng, freetype, libtool, jpeg, xz, imagemagick, lcdf-typetools, boost, fontconfig, szip, hdf5, libtiff, vtk, wxmac* *==>** Installing therion dependency: **libpng* *==>** Downloading https://downloads.sf.net/project/machomebrew/Bottles/libpng-1.6.16.yosemite.... <https://downloads.sf.net/project/machomebrew/Bottles/libpng-1.6.16.yosemite.bottle.tar.gz>* ######################################################################## 100.0% *==>** Pouring libpng-1.6.16.yosemite.bottle.tar.gz* /usr/bin/install_name_tool: object: /usr/local/Cellar/libpng/1.6.16/bin/pngfix malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. *==>** Summary* 🍺 /usr/local/Cellar/libpng/1.6.16: 17 files, 1.3M *==>** Installing therion dependency: **freetype* *==>** Downloading https://downloads.sf.net/project/machomebrew/Bottles/freetype-2.5.5.yosemite... <https://downloads.sf.net/project/machomebrew/Bottles/freetype-2.5.5.yosemite.bottle.tar.gz>* ######################################################################## 100.0% *==>** Pouring freetype-2.5.5.yosemite.bottle.tar.gz* /usr/bin/install_name_tool: object: /usr/local/Cellar/freetype/2.5.5/lib/libfreetype.6.dylib malformed object (unknown load command 8) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. *==>** Summary* 🍺 /usr/local/Cellar/freetype/2.5.5: 60 files, 2.6M *==>** Installing therion dependency: **libtool* *==>** Downloading https://downloads.sf.net/project/machomebrew/Bottles/libtool-2.4.5.yosemite.... <https://downloads.sf.net/project/machomebrew/Bottles/libtool-2.4.5.yosemite.bottle.tar.gz>* ######################################################################## 100.0% *==>** Pouring libtool-2.4.5.yosemite.bottle.tar.gz* *==>** Caveats* In order to prevent conflicts with Apple's own libtool we have prepended a "g" so, you have instead: glibtool and glibtoolize. /usr/bin/install_name_tool: object: /usr/local/Cellar/libtool/2.4.5/lib/libltdl.7.dylib malformed object (unknown load command 8) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. *==>** Summary* 🍺 /usr/local/Cellar/libtool/2.4.5: 69 files, 3.8M *==>** Installing therion dependency: **jpeg* *==>** Downloading https://downloads.sf.net/project/machomebrew/Bottles/jpeg-8d.yosemite.bottle... <https://downloads.sf.net/project/machomebrew/Bottles/jpeg-8d.yosemite.bottle.2.tar.gz>* ######################################################################## 100.0% *==>** Pouring jpeg-8d.yosemite.bottle.2.tar.gz* /usr/bin/install_name_tool: object: /usr/local/Cellar/jpeg/8d/bin/cjpeg malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. *==>** Summary* 🍺 /usr/local/Cellar/jpeg/8d: 18 files, 776K *==>** Installing therion dependency: **xz* *==>** Downloading https://downloads.sf.net/project/machomebrew/Bottles/xz-5.2.0.yosemite.bottl... <https://downloads.sf.net/project/machomebrew/Bottles/xz-5.2.0.yosemite.bottle.tar.gz>* ######################################################################## 100.0% *==>** Pouring xz-5.2.0.yosemite.bottle.tar.gz* /usr/bin/install_name_tool: object: /usr/local/Cellar/xz/5.2.0/bin/lzmadec malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. *==>** Summary* 🍺 /usr/local/Cellar/xz/5.2.0: 59 files, 1.7M *==>** Installing therion dependency: **imagemagick* *==>** Downloading https://downloads.sf.net/project/machomebrew/Bottles/imagemagick-6.9.0-3.yos... <https://downloads.sf.net/project/machomebrew/Bottles/imagemagick-6.9.0-3.yosemite.bottle.tar.gz>* ######################################################################## 100.0% *==>** Pouring imagemagick-6.9.0-3.yosemite.bottle.tar.gz* /usr/bin/install_name_tool: object: /usr/local/Cellar/imagemagick/6.9.0-3/bin/animate malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. *==>** Summary* 🍺 /usr/local/Cellar/imagemagick/6.9.0-3: 1440 files, 22M *==>** Installing therion dependency: **lcdf-typetools* couldn't understand kern.osversion `14.0.0' *==>** Downloading http://www.lcdf.org/type/lcdf-typetools-2.104.tar.gz <http://www.lcdf.org/type/lcdf-typetools-2.104.tar.gz>* ######################################################################## 100.0% *==>** ./configure --prefix=/usr/local/Cellar/lcdf-typetools/2.104 --without-kpathsea* *==>** make install* 🍺 /usr/local/Cellar/lcdf-typetools/2.104: 29 files, 4.3M, built in 5.5 minutes *==>** Installing therion dependency: **boost* *==>** Downloading https://downloads.sf.net/project/machomebrew/Bottles/boost-1.57.0.yosemite.b... <https://downloads.sf.net/project/machomebrew/Bottles/boost-1.57.0.yosemite.bottle.tar.gz>* ######################################################################## 100.0% *==>** Pouring boost-1.57.0.yosemite.bottle.tar.gz* /usr/bin/install_name_tool: object: /usr/local/Cellar/boost/1.57.0/lib/libboost_atomic-mt.dylib malformed object (unknown load command 8) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. *==>** Summary* 🍺 /usr/local/Cellar/boost/1.57.0: 10572 files, 439M *==>** Installing therion dependency: **fontconfig* *==>** Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosem... <https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosemite.bottle.3.tar.gz>* ######################################################################## 100.0% *==>** Pouring fontconfig-2.11.1.yosemite.bottle.3.tar.gz* /usr/bin/install_name_tool: object: /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. *==>** /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv* ^\Warning: The post-install step did not complete successfully You can try again using `brew postinstall fontconfig` *==>** Summary* 🍺 /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3.6M *==>** Installing therion dependency: **szip* couldn't understand kern.osversion `14.0.0' *==>** Downloading http://www.hdfgroup.org/ftp/lib-external/szip/2.1/src/szip-2.1.tar.gz <http://www.hdfgroup.org/ftp/lib-external/szip/2.1/src/szip-2.1.tar.gz>* ######################################################################## 100.0% *==>** ./configure --prefix=/usr/local/Cellar/szip/2.1* *==>** make install* 🍺 /usr/local/Cellar/szip/2.1: 9 files, 132K, built in 28 seconds *==>** Installing therion dependency: **hdf5* *==>** Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/hdf5-1.8.14.yos... <https://downloads.sf.net/project/machomebrew/Bottles/science/hdf5-1.8.14.yosemite.bottle.tar.gz>* ######################################################################## 100.0% *==>** Pouring hdf5-1.8.14.yosemite.bottle.tar.gz* /usr/bin/install_name_tool: object: /usr/local/Cellar/hdf5/1.8.14/bin/gif2h5 malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. *==>** Summary* 🍺 /usr/local/Cellar/hdf5/1.8.14: 118 files, 9.9M *==>** Installing therion dependency: **libtiff* *==>** Downloading https://downloads.sf.net/project/machomebrew/Bottles/libtiff-4.0.3.yosemite.... <https://downloads.sf.net/project/machomebrew/Bottles/libtiff-4.0.3.yosemite.bottle.tar.gz>* ######################################################################## 100.0% *==>** Pouring libtiff-4.0.3.yosemite.bottle.tar.gz* /usr/bin/install_name_tool: object: /usr/local/Cellar/libtiff/4.0.3/bin/bmp2tiff malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. *==>** Summary* 🍺 /usr/local/Cellar/libtiff/4.0.3: 254 files, 3.8M *==>** Installing therion dependency: **vtk* *==>** Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yos... <https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yosemite.bottle.tar.gz>* ######################################################################## 100.0% *==>** Pouring vtk-6.1.0_1.yosemite.bottle.tar.gz* *==>** Caveats* Even without the --with-qt option, you can display native VTK render windows from python. Alternatively, you can integrate the RenderWindowInteractor in PyQt, PySide, Tk or Wx at runtime. Read more: import vtk.qt4; help(vtk.qt4) or import vtk.wx; help(vtk.wx) Python modules have been installed and Homebrew's site-packages is not in your Python sys.path, so you will not be able to import the modules this formula installed. If you plan to develop with these modules, please run: mkdir -p /Users/yonesshariatmadari/Library/Python/2.7/lib/python/site-packages echo 'import site; site.addsitedir("/usr/local/lib/python2.7/site-packages")' >> /Users/yonesshariatmadari/Library/Python/2.7/lib/python/site-packages/homebrew.pth /usr/bin/install_name_tool: object: /usr/local/Cellar/vtk/6.1.0_1/bin/vtkHashSource-6.1 malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. *==>** Summary* 🍺 /usr/local/Cellar/vtk/6.1.0_1: 3005 files, 123M *==>** Installing therion dependency: **wxmac* *==>** Downloading https://downloads.sf.net/project/machomebrew/Bottles/wxmac-3.0.2.yosemite.bo... <https://downloads.sf.net/project/machomebrew/Bottles/wxmac-3.0.2.yosemite.bottle.9.tar.gz>* ######################################################################## 100.0% *==>** Pouring wxmac-3.0.2.yosemite.bottle.9.tar.gz* /usr/bin/install_name_tool: for architecture i386 object: /usr/local/Cellar/wxmac/3.0.2/bin/wxrc-3.0 malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. *==>** Summary* 🍺 /usr/local/Cellar/wxmac/3.0.2: 777 files, 41M *==>** Installing **therion* couldn't understand kern.osversion `14.0.0' *==>** Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz>* ######################################################################## 100.0% *==>** Downloading http://www.lblazek.cz/osx_vtk6.patch <http://www.lblazek.cz/osx_vtk6.patch>* ######################################################################## 100.0% *==>** Patching* patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile *==>** make config-macosx* *==>** make* couldn't understand kern.osversion `14.0.0' loch/lxFile.cxx: In member function ‘void lxFile::ImportPLT(const char*)’: loch/lxFile.cxx:755: error: ‘getline’ was not declared in this scope make: *** [extern/lxFile.o] Error 1 make: *** Waiting for unfinished jobs.... couldn't understand kern.osversion `14.0.0' READ THIS: http://git.io/brew-troubleshooting *what should i do for this error, please help me.* *thank you * *Y.SH* On Sat, Jan 31, 2015 at 2:03 AM, Martin Sluka <martinsluka@mac.com> wrote:
It is on my computer (OSX 10.8.5):
as written in wiki:
brew tap homebrew/science brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion....
m.s.
30. 1. 2015 v 22:23, Yones Shariatmadari <yonessh2@gmail.com>:
*Hi*
*i use homebrew , it is very good for checking but that error is in terminal !!!* *problem not solve.*
*please check this:*
Macs-MacBook-Pro:therion yonesshariatmadari$ brew install therion Error: No available formula for therion Searching formulae... Searching taps...
On Fri, Jan 30, 2015 at 3:37 PM, Martin Sluka <martinsluka@mac.com> wrote:
30. 1. 2015 v 12:05, Yones Shariatmadari <yonessh2@gmail.com>:
what should i do? please help me
Hi,
try to use HomeBrew instalation:
- download and install HomeBrew - http://brew.sh
- in terminal: brew install therion
m.
_______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) <http://pms.sbmu.ac.ir/> Shahid Beheshti University of Medical Sciences (S.B.M.U) <http://www.sbmu.ac.ir/> Tehran, Iran _______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
_______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) <http://pms.sbmu.ac.ir> Shahid Beheshti University of Medical Sciences (S.B.M.U) <http://www.sbmu.ac.ir/> Tehran, Iran
Hi Guys I have officially put the therion brew into the science project brew install homebrew/science/therion For now therion still needs VTK5. While by default it tries to install VTK6. best Chris
On 31 Jan 2015, at 14:08, Yones Shariatmadari <yonessh2@gmail.com> wrote:
Hi Friends thank you for your interest my friends. but i have an error in installing therion.
i use mac os 10.10.1 !
type the following brew in terminal :
the result is :
Macs-MacBook-Pro:~ yonesshariatmadari$ brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.... <https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.rb> ######################################################################## 100.0% Warning: You have an outdated version of /usr/bin/install_name_tool installed. This will cause binary package installations to fail. This can happen if you install osx-gcc-installer or RailsInstaller. To restore it, you must reinstall OS X or restore the binary from the OS packages. ==> Installing dependencies for therion: libpng, freetype, libtool, jpeg, xz, imagemagick, lcdf-typetools, boost, fontconfig, szip, hdf5, libtiff, vtk, wxmac ==> Installing therion dependency: libpng ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/libpng-1.6.16.yosemite.... <https://downloads.sf.net/project/machomebrew/Bottles/libpng-1.6.16.yosemite.bottle.tar.gz> ######################################################################## 100.0% ==> Pouring libpng-1.6.16.yosemite.bottle.tar.gz /usr/bin/install_name_tool: object: /usr/local/Cellar/libpng/1.6.16/bin/pngfix malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. ==> Summary 🍺 /usr/local/Cellar/libpng/1.6.16: 17 files, 1.3M ==> Installing therion dependency: freetype ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/freetype-2.5.5.yosemite... <https://downloads.sf.net/project/machomebrew/Bottles/freetype-2.5.5.yosemite.bottle.tar.gz> ######################################################################## 100.0% ==> Pouring freetype-2.5.5.yosemite.bottle.tar.gz /usr/bin/install_name_tool: object: /usr/local/Cellar/freetype/2.5.5/lib/libfreetype.6.dylib malformed object (unknown load command 8) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. ==> Summary 🍺 /usr/local/Cellar/freetype/2.5.5: 60 files, 2.6M ==> Installing therion dependency: libtool ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/libtool-2.4.5.yosemite.... <https://downloads.sf.net/project/machomebrew/Bottles/libtool-2.4.5.yosemite.bottle.tar.gz> ######################################################################## 100.0% ==> Pouring libtool-2.4.5.yosemite.bottle.tar.gz ==> Caveats In order to prevent conflicts with Apple's own libtool we have prepended a "g" so, you have instead: glibtool and glibtoolize. /usr/bin/install_name_tool: object: /usr/local/Cellar/libtool/2.4.5/lib/libltdl.7.dylib malformed object (unknown load command 8) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. ==> Summary 🍺 /usr/local/Cellar/libtool/2.4.5: 69 files, 3.8M ==> Installing therion dependency: jpeg ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/jpeg-8d.yosemite.bottle... <https://downloads.sf.net/project/machomebrew/Bottles/jpeg-8d.yosemite.bottle.2.tar.gz> ######################################################################## 100.0% ==> Pouring jpeg-8d.yosemite.bottle.2.tar.gz /usr/bin/install_name_tool: object: /usr/local/Cellar/jpeg/8d/bin/cjpeg malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. ==> Summary 🍺 /usr/local/Cellar/jpeg/8d: 18 files, 776K ==> Installing therion dependency: xz ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/xz-5.2.0.yosemite.bottl... <https://downloads.sf.net/project/machomebrew/Bottles/xz-5.2.0.yosemite.bottle.tar.gz> ######################################################################## 100.0% ==> Pouring xz-5.2.0.yosemite.bottle.tar.gz /usr/bin/install_name_tool: object: /usr/local/Cellar/xz/5.2.0/bin/lzmadec malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. ==> Summary 🍺 /usr/local/Cellar/xz/5.2.0: 59 files, 1.7M ==> Installing therion dependency: imagemagick ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/imagemagick-6.9.0-3.yos... <https://downloads.sf.net/project/machomebrew/Bottles/imagemagick-6.9.0-3.yosemite.bottle.tar.gz> ######################################################################## 100.0% ==> Pouring imagemagick-6.9.0-3.yosemite.bottle.tar.gz /usr/bin/install_name_tool: object: /usr/local/Cellar/imagemagick/6.9.0-3/bin/animate malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. ==> Summary 🍺 /usr/local/Cellar/imagemagick/6.9.0-3: 1440 files, 22M ==> Installing therion dependency: lcdf-typetools couldn't understand kern.osversion `14.0.0' ==> Downloading http://www.lcdf.org/type/lcdf-typetools-2.104.tar.gz <http://www.lcdf.org/type/lcdf-typetools-2.104.tar.gz> ######################################################################## 100.0% ==> ./configure --prefix=/usr/local/Cellar/lcdf-typetools/2.104 --without-kpathsea ==> make install 🍺 /usr/local/Cellar/lcdf-typetools/2.104: 29 files, 4.3M, built in 5.5 minutes ==> Installing therion dependency: boost ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/boost-1.57.0.yosemite.b... <https://downloads.sf.net/project/machomebrew/Bottles/boost-1.57.0.yosemite.bottle.tar.gz> ######################################################################## 100.0% ==> Pouring boost-1.57.0.yosemite.bottle.tar.gz /usr/bin/install_name_tool: object: /usr/local/Cellar/boost/1.57.0/lib/libboost_atomic-mt.dylib malformed object (unknown load command 8) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. ==> Summary 🍺 /usr/local/Cellar/boost/1.57.0: 10572 files, 439M ==> Installing therion dependency: fontconfig ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosem... <https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosemite.bottle.3.tar.gz> ######################################################################## 100.0% ==> Pouring fontconfig-2.11.1.yosemite.bottle.3.tar.gz /usr/bin/install_name_tool: object: /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. ==> /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv
^\Warning: The post-install step did not complete successfully You can try again using `brew postinstall fontconfig` ==> Summary 🍺 /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3.6M ==> Installing therion dependency: szip couldn't understand kern.osversion `14.0.0' ==> Downloading http://www.hdfgroup.org/ftp/lib-external/szip/2.1/src/szip-2.1.tar.gz <http://www.hdfgroup.org/ftp/lib-external/szip/2.1/src/szip-2.1.tar.gz> ######################################################################## 100.0% ==> ./configure --prefix=/usr/local/Cellar/szip/2.1 ==> make install 🍺 /usr/local/Cellar/szip/2.1: 9 files, 132K, built in 28 seconds ==> Installing therion dependency: hdf5 ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/hdf5-1.8.14.yos... <https://downloads.sf.net/project/machomebrew/Bottles/science/hdf5-1.8.14.yosemite.bottle.tar.gz> ######################################################################## 100.0% ==> Pouring hdf5-1.8.14.yosemite.bottle.tar.gz /usr/bin/install_name_tool: object: /usr/local/Cellar/hdf5/1.8.14/bin/gif2h5 malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. ==> Summary 🍺 /usr/local/Cellar/hdf5/1.8.14: 118 files, 9.9M ==> Installing therion dependency: libtiff ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/libtiff-4.0.3.yosemite.... <https://downloads.sf.net/project/machomebrew/Bottles/libtiff-4.0.3.yosemite.bottle.tar.gz> ######################################################################## 100.0% ==> Pouring libtiff-4.0.3.yosemite.bottle.tar.gz /usr/bin/install_name_tool: object: /usr/local/Cellar/libtiff/4.0.3/bin/bmp2tiff malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. ==> Summary 🍺 /usr/local/Cellar/libtiff/4.0.3: 254 files, 3.8M ==> Installing therion dependency: vtk ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yos... <https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yosemite.bottle.tar.gz> ######################################################################## 100.0% ==> Pouring vtk-6.1.0_1.yosemite.bottle.tar.gz ==> Caveats Even without the --with-qt option, you can display native VTK render windows from python. Alternatively, you can integrate the RenderWindowInteractor in PyQt, PySide, Tk or Wx at runtime. Read more: import vtk.qt4; help(vtk.qt4) or import vtk.wx; help(vtk.wx)
Python modules have been installed and Homebrew's site-packages is not in your Python sys.path, so you will not be able to import the modules this formula installed. If you plan to develop with these modules, please run: mkdir -p /Users/yonesshariatmadari/Library/Python/2.7/lib/python/site-packages echo 'import site; site.addsitedir("/usr/local/lib/python2.7/site-packages")' >> /Users/yonesshariatmadari/Library/Python/2.7/lib/python/site-packages/homebrew.pth /usr/bin/install_name_tool: object: /usr/local/Cellar/vtk/6.1.0_1/bin/vtkHashSource-6.1 malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. ==> Summary 🍺 /usr/local/Cellar/vtk/6.1.0_1: 3005 files, 123M ==> Installing therion dependency: wxmac ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/wxmac-3.0.2.yosemite.bo... <https://downloads.sf.net/project/machomebrew/Bottles/wxmac-3.0.2.yosemite.bottle.9.tar.gz> ######################################################################## 100.0% ==> Pouring wxmac-3.0.2.yosemite.bottle.9.tar.gz /usr/bin/install_name_tool: for architecture i386 object: /usr/local/Cellar/wxmac/3.0.2/bin/wxrc-3.0 malformed object (unknown load command 9) Error: Failed to fix install names The formula built, but you may encounter issues using it or linking other formula against it. ==> Summary 🍺 /usr/local/Cellar/wxmac/3.0.2: 777 files, 41M ==> Installing therion couldn't understand kern.osversion `14.0.0' ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> ######################################################################## 100.0% ==> Downloading http://www.lblazek.cz/osx_vtk6.patch <http://www.lblazek.cz/osx_vtk6.patch> ######################################################################## 100.0% ==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make couldn't understand kern.osversion `14.0.0' loch/lxFile.cxx: In member function ‘void lxFile::ImportPLT(const char*)’: loch/lxFile.cxx:755: error: ‘getline’ was not declared in this scope make: *** [extern/lxFile.o] Error 1 make: *** Waiting for unfinished jobs.... couldn't understand kern.osversion `14.0.0'
READ THIS: http://git.io/brew-troubleshooting <http://git.io/brew-troubleshooting>
what should i do for this error, please help me.
thank you Y.SH
On Sat, Jan 31, 2015 at 2:03 AM, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>> wrote: It is on my computer (OSX 10.8.5):
as written in wiki:
brew tap homebrew/science brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.... <https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.rb>
m.s.
30. 1. 2015 v 22:23, Yones Shariatmadari <yonessh2@gmail.com <mailto:yonessh2@gmail.com>>:
Hi
i use homebrew , it is very good for checking but that error is in terminal !!! problem not solve.
please check this:
Macs-MacBook-Pro:therion yonesshariatmadari$ brew install therion Error: No available formula for therion Searching formulae... Searching taps...
On Fri, Jan 30, 2015 at 3:37 PM, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>> wrote:
30. 1. 2015 v 12:05, Yones Shariatmadari <yonessh2@gmail.com <mailto:yonessh2@gmail.com>>:
what should i do? please help me
Hi,
try to use HomeBrew instalation:
- download and install HomeBrew - http://brew.sh <http://brew.sh/>
- in terminal: brew install therion
m.
_______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) <http://pms.sbmu.ac.ir/> Shahid Beheshti University of Medical Sciences (S.B.M.U) <http://www.sbmu.ac.ir/> Tehran, Iran _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
_______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) <http://pms.sbmu.ac.ir/> Shahid Beheshti University of Medical Sciences (S.B.M.U) <http://www.sbmu.ac.ir/> Tehran, Iran _______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
31. 1. 2015 v 20:43, Christian Sandrini <christian.sandrini@me.com>:
Hi Guys
I have officially put the therion brew into the science project
brew install homebrew/science/therion
For now therion still needs VTK5. While by default it tries to install VTK6.
Hi Christian, isn’t the last version of Therion 5.3.16? Current version is 5.3.16, released on Dec 30, 2014 m.s.
Hi Martin Huh I must have missed that. Will adapt the built in the coming few days maybe 2 weeks. Going to the Maledives tomorrow. best Chris
On 01 Feb 2015, at 00:19, Martin Sluka <martinsluka@mac.com> wrote:
31. 1. 2015 v 20:43, Christian Sandrini <christian.sandrini@me.com <mailto:christian.sandrini@me.com>>:
Hi Guys
I have officially put the therion brew into the science project
brew install homebrew/science/therion
For now therion still needs VTK5. While by default it tries to install VTK6.
Hi Christian,
isn’t the last version of Therion 5.3.16?
Current version is 5.3.16, released on Dec 30, 2014
m.s. _______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
Something wrong is there:
31. 1. 2015 v 20:43, Christian Sandrini <christian.sandrini@me.com>:
For now therion still needs VTK5. While by default it tries to install VTK6.
==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz ######################################################################## 100,0% ==> make config-macosx ==> make ^ 1 error generated. make[1]: *** [.././loch/lxSetup.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make: *** [loch/loch] Error 2 READ THIS: http://git.io/brew-troubleshooting If reporting this issue please do so at (not Homebrew/homebrew): https://github.com/homebrew/homebrew-science/issues M.S.
Instalation on Yosemite: - installed MacTex - installed (but still version 5.3.15 only!) Therion according recipe on wiki from Láďa Blažek successfully : Martin-iMac:~ martinsluka1$ brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.... ######################################################################## 100,0% ==> Installing dependencies for therion: fontconfig, vtk ==> Installing therion dependency: fontconfig ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosem... ######################################################################## 100,0% ==> Pouring fontconfig-2.11.1.yosemite.bottle.3.tar.gz ==> /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv 🍺 /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3,6M ==> Installing therion dependency: vtk ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yos... ######################################################################## 100,0% ==> Pouring vtk-6.1.0_1.yosemite.bottle.tar.gz ==> Caveats Even without the --with-qt option, you can display native VTK render windows from python. Alternatively, you can integrate the RenderWindowInteractor in PyQt, PySide, Tk or Wx at runtime. Read more: import vtk.qt4; help(vtk.qt4) or import vtk.wx; help(vtk.wx) ==> Summary 🍺 /usr/local/Cellar/vtk/6.1.0_1: 3005 files, 123M ==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz Already downloaded: /Library/Caches/Homebrew/therion-5.3.15.tar.gz ==> Downloading http://www.lblazek.cz/osx_vtk6.patch ######################################################################## 100,0% ==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install 🍺 /usr/local/Cellar/therion/5.3.15: 6 files, 4,4M, built in 2.5 minutes Martin-iMac:~ martinsluka1$ xtherion
1. 2. 2015 v 0:22, Martin Sluka <martinsluka@mac.com>:
Something wrong is there:
31. 1. 2015 v 20:43, Christian Sandrini <christian.sandrini@me.com <mailto:christian.sandrini@me.com>>:
For now therion still needs VTK5. While by default it tries to install VTK6.
==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> ######################################################################## 100,0% ==> make config-macosx ==> make ^ 1 error generated. make[1]: *** [.././loch/lxSetup.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make: *** [loch/loch] Error 2
READ THIS: http://git.io/brew-troubleshooting <http://git.io/brew-troubleshooting> If reporting this issue please do so at (not Homebrew/homebrew): https://github.com/homebrew/homebrew-science/issues <https://github.com/homebrew/homebrew-science/issues>
M.S. _______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
restore mac os 10.10.1 and try to install therion again. all of program install and work good but therion doesn't run!!! also loch work very well. *==>** Patching* patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile *==>** make config-macosx* *==>** make* *==>** make install* 🍺 /usr/local/Cellar/therion/5.3.15: 6 files, 4.4M, built in 2.1 minutes Macs-MacBook-Pro:/ yonesshariatmadari$ xtherion /usr/local/bin/xtherion: line 3: exec: wish: not foundw On Sun, Feb 1, 2015 at 11:42 AM, Martin Sluka <martinsluka@mac.com> wrote:
Instalation on Yosemite:
- installed MacTex - installed (but still version 5.3.15 only!) Therion according recipe on wiki from Láďa Blažek successfully :
Martin-iMac:~ martinsluka1$ brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.... ######################################################################## 100,0% *==>** Installing dependencies for therion: **fontconfig, vtk* *==>** Installing therion dependency: **fontconfig* *==>** Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosem... <https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosemite.bottle.3.tar.gz>* ######################################################################## 100,0% *==>** Pouring fontconfig-2.11.1.yosemite.bottle.3.tar.gz* *==>** /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv* [image: 🍺] /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3,6M *==>** Installing therion dependency: **vtk* *==>** Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yos... <https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yosemite.bottle.tar.gz>* ######################################################################## 100,0% *==>** Pouring vtk-6.1.0_1.yosemite.bottle.tar.gz* *==>** Caveats* Even without the --with-qt option, you can display native VTK render windows from python. Alternatively, you can integrate the RenderWindowInteractor in PyQt, PySide, Tk or Wx at runtime. Read more: import vtk.qt4; help(vtk.qt4) or import vtk.wx; help(vtk.wx) *==>** Summary* [image: 🍺] /usr/local/Cellar/vtk/6.1.0_1: 3005 files, 123M *==>** Installing **therion* *==>** Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz>* Already downloaded: /Library/Caches/Homebrew/therion-5.3.15.tar.gz *==>** Downloading http://www.lblazek.cz/osx_vtk6.patch <http://www.lblazek.cz/osx_vtk6.patch>* ######################################################################## 100,0% *==>** Patching* patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile *==>** make config-macosx* *==>** make* *==>** make install* [image: 🍺] /usr/local/Cellar/therion/5.3.15: 6 files, 4,4M, built in 2.5 minutes Martin-iMac:~ martinsluka1$ xtherion
1. 2. 2015 v 0:22, Martin Sluka <martinsluka@mac.com>:
Something wrong is there:
31. 1. 2015 v 20:43, Christian Sandrini <christian.sandrini@me.com>:
For now therion still needs VTK5. While by default it tries to install VTK6.
*==>** Installing **therion* *==>** Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz>* ######################################################################## 100,0% *==>** make config-macosx* *==>** make* ^ 1 error generated. make[1]: *** [.././loch/lxSetup.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make: *** [loch/loch] Error 2
READ THIS: http://git.io/brew-troubleshooting If reporting this issue please do so at (not Homebrew/homebrew): https://github.com/homebrew/homebrew-science/issues
M.S. _______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
_______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) <http://pms.sbmu.ac.ir> Shahid Beheshti University of Medical Sciences (S.B.M.U) <http://www.sbmu.ac.ir/> Tehran, Iran
if you run from Terminal command “xtherion” what’s happen? I have problem to open thconfig file. But if I rename thconfig to a.thconfig then it is possible to open. m.s.
1. 2. 2015 v 9:25, Yones Shariatmadari <yonessh2@gmail.com>:
restore mac os 10.10.1 and try to install therion again.
all of program install and work good but therion doesn't run!!! also loch work very well.
==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install 🍺 /usr/local/Cellar/therion/5.3.15: 6 files, 4.4M, built in 2.1 minutes Macs-MacBook-Pro:/ yonesshariatmadari$ xtherion /usr/local/bin/xtherion: line 3: exec: wish: not foundw
On Sun, Feb 1, 2015 at 11:42 AM, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>> wrote: Instalation on Yosemite:
- installed MacTex - installed (but still version 5.3.15 only!) Therion according recipe on wiki from Láďa Blažek successfully :
Martin-iMac:~ martinsluka1$ brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.... <https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.rb> ######################################################################## 100,0% ==> Installing dependencies for therion: fontconfig, vtk ==> Installing therion dependency: fontconfig ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosem... <https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosemite.bottle.3.tar.gz> ######################################################################## 100,0% ==> Pouring fontconfig-2.11.1.yosemite.bottle.3.tar.gz ==> /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3,6M ==> Installing therion dependency: vtk ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yos... <https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yosemite.bottle.tar.gz> ######################################################################## 100,0% ==> Pouring vtk-6.1.0_1.yosemite.bottle.tar.gz ==> Caveats Even without the --with-qt option, you can display native VTK render windows from python. Alternatively, you can integrate the RenderWindowInteractor in PyQt, PySide, Tk or Wx at runtime. Read more: import vtk.qt4; help(vtk.qt4) or import vtk.wx; help(vtk.wx) ==> Summary /usr/local/Cellar/vtk/6.1.0_1: 3005 files, 123M ==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> Already downloaded: /Library/Caches/Homebrew/therion-5.3.15.tar.gz ==> Downloading http://www.lblazek.cz/osx_vtk6.patch <http://www.lblazek.cz/osx_vtk6.patch> ######################################################################## 100,0% ==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install /usr/local/Cellar/therion/5.3.15: 6 files, 4,4M, built in 2.5 minutes Martin-iMac:~ martinsluka1$ xtherion
1. 2. 2015 v 0:22, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>>:
Something wrong is there:
31. 1. 2015 v 20:43, Christian Sandrini <christian.sandrini@me.com <mailto:christian.sandrini@me.com>>:
For now therion still needs VTK5. While by default it tries to install VTK6.
==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> ######################################################################## 100,0% ==> make config-macosx ==> make ^ 1 error generated. make[1]: *** [.././loch/lxSetup.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make: *** [loch/loch] Error 2
READ THIS: http://git.io/brew-troubleshooting <http://git.io/brew-troubleshooting> If reporting this issue please do so at (not Homebrew/homebrew): https://github.com/homebrew/homebrew-science/issues <https://github.com/homebrew/homebrew-science/issues>
M.S. _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
_______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) <http://pms.sbmu.ac.ir/> Shahid Beheshti University of Medical Sciences (S.B.M.U) <http://www.sbmu.ac.ir/> Tehran, Iran _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
Guys I have updated the brew file and issued a pull request. This might take a while until you will find in the official repository. You can have it directly from my git repository brew install https://raw.githubusercontent.com/un1x86/homebrew-science/therion/therion.rb <https://raw.githubusercontent.com/un1x86/homebrew-science/therion/therion.rb> This will install the latest version including VTK6 best Chris
On 01 Feb 2015, at 12:55, Martin Sluka <martinsluka@mac.com> wrote:
if you run from Terminal command “xtherion” what’s happen?
I have problem to open thconfig file. But if I rename thconfig to a.thconfig then it is possible to open.
m.s.
1. 2. 2015 v 9:25, Yones Shariatmadari <yonessh2@gmail.com <mailto:yonessh2@gmail.com>>:
restore mac os 10.10.1 and try to install therion again.
all of program install and work good but therion doesn't run!!! also loch work very well.
==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install 🍺 /usr/local/Cellar/therion/5.3.15: 6 files, 4.4M, built in 2.1 minutes Macs-MacBook-Pro:/ yonesshariatmadari$ xtherion /usr/local/bin/xtherion: line 3: exec: wish: not foundw
On Sun, Feb 1, 2015 at 11:42 AM, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>> wrote: Instalation on Yosemite:
- installed MacTex - installed (but still version 5.3.15 only!) Therion according recipe on wiki from Láďa Blažek successfully :
Martin-iMac:~ martinsluka1$ brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.... <https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.rb> ######################################################################## 100,0% ==> Installing dependencies for therion: fontconfig, vtk ==> Installing therion dependency: fontconfig ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosem... <https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosemite.bottle.3.tar.gz> ######################################################################## 100,0% ==> Pouring fontconfig-2.11.1.yosemite.bottle.3.tar.gz ==> /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3,6M ==> Installing therion dependency: vtk ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yos... <https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yosemite.bottle.tar.gz> ######################################################################## 100,0% ==> Pouring vtk-6.1.0_1.yosemite.bottle.tar.gz ==> Caveats Even without the --with-qt option, you can display native VTK render windows from python. Alternatively, you can integrate the RenderWindowInteractor in PyQt, PySide, Tk or Wx at runtime. Read more: import vtk.qt4; help(vtk.qt4) or import vtk.wx; help(vtk.wx) ==> Summary /usr/local/Cellar/vtk/6.1.0_1: 3005 files, 123M ==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> Already downloaded: /Library/Caches/Homebrew/therion-5.3.15.tar.gz ==> Downloading http://www.lblazek.cz/osx_vtk6.patch <http://www.lblazek.cz/osx_vtk6.patch> ######################################################################## 100,0% ==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install /usr/local/Cellar/therion/5.3.15: 6 files, 4,4M, built in 2.5 minutes Martin-iMac:~ martinsluka1$ xtherion
1. 2. 2015 v 0:22, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>>:
Something wrong is there:
31. 1. 2015 v 20:43, Christian Sandrini <christian.sandrini@me.com <mailto:christian.sandrini@me.com>>:
For now therion still needs VTK5. While by default it tries to install VTK6.
==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> ######################################################################## 100,0% ==> make config-macosx ==> make ^ 1 error generated. make[1]: *** [.././loch/lxSetup.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make: *** [loch/loch] Error 2
READ THIS: http://git.io/brew-troubleshooting <http://git.io/brew-troubleshooting> If reporting this issue please do so at (not Homebrew/homebrew): https://github.com/homebrew/homebrew-science/issues <https://github.com/homebrew/homebrew-science/issues>
M.S. _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
_______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) <http://pms.sbmu.ac.ir/> Shahid Beheshti University of Medical Sciences (S.B.M.U) <http://www.sbmu.ac.ir/> Tehran, Iran _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
Hello, There are differences in software if I install it from debian repository? Thank You Filippo On 01/02/2015 13:11, Christian Sandrini wrote:
Guys
I have updated the brew file and issued a pull request. This might take a while until you will find in the official repository. You can have it directly from my git repository
brew install https://raw.githubusercontent.com/un1x86/homebrew-science/therion/therion.rb <https://raw.githubusercontent.com/un1x86/homebrew-science/therion/therion.rb>
This will install the latest version including VTK6
best Chris
On 01 Feb 2015, at 12:55, Martin Sluka <martinsluka@mac.com> wrote:
if you run from Terminal command “xtherion” what’s happen?
I have problem to open thconfig file. But if I rename thconfig to a.thconfig then it is possible to open.
m.s.
1. 2. 2015 v 9:25, Yones Shariatmadari <yonessh2@gmail.com <mailto:yonessh2@gmail.com>>:
restore mac os 10.10.1 and try to install therion again.
all of program install and work good but therion doesn't run!!! also loch work very well.
==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install 🍺 /usr/local/Cellar/therion/5.3.15: 6 files, 4.4M, built in 2.1 minutes Macs-MacBook-Pro:/ yonesshariatmadari$ xtherion /usr/local/bin/xtherion: line 3: exec: wish: not foundw
On Sun, Feb 1, 2015 at 11:42 AM, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>> wrote: Instalation on Yosemite:
- installed MacTex - installed (but still version 5.3.15 only!) Therion according recipe on wiki from Láďa Blažek successfully :
Martin-iMac:~ martinsluka1$ brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.... <https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.rb> ######################################################################## 100,0% ==> Installing dependencies for therion: fontconfig, vtk ==> Installing therion dependency: fontconfig ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosem... <https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosemite.bottle.3.tar.gz> ######################################################################## 100,0% ==> Pouring fontconfig-2.11.1.yosemite.bottle.3.tar.gz ==> /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3,6M ==> Installing therion dependency: vtk ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yos... <https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yosemite.bottle.tar.gz> ######################################################################## 100,0% ==> Pouring vtk-6.1.0_1.yosemite.bottle.tar.gz ==> Caveats Even without the --with-qt option, you can display native VTK render windows from python. Alternatively, you can integrate the RenderWindowInteractor in PyQt, PySide, Tk or Wx at runtime. Read more: import vtk.qt4; help(vtk.qt4) or import vtk.wx; help(vtk.wx) ==> Summary /usr/local/Cellar/vtk/6.1.0_1: 3005 files, 123M ==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> Already downloaded: /Library/Caches/Homebrew/therion-5.3.15.tar.gz ==> Downloading http://www.lblazek.cz/osx_vtk6.patch <http://www.lblazek.cz/osx_vtk6.patch> ######################################################################## 100,0% ==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install /usr/local/Cellar/therion/5.3.15: 6 files, 4,4M, built in 2.5 minutes Martin-iMac:~ martinsluka1$ xtherion
1. 2. 2015 v 0:22, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>>:
Something wrong is there:
31. 1. 2015 v 20:43, Christian Sandrini <christian.sandrini@me.com <mailto:christian.sandrini@me.com>>:
For now therion still needs VTK5. While by default it tries to install VTK6.
==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> ######################################################################## 100,0% ==> make config-macosx ==> make ^ 1 error generated. make[1]: *** [.././loch/lxSetup.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make: *** [loch/loch] Error 2
READ THIS: http://git.io/brew-troubleshooting <http://git.io/brew-troubleshooting> If reporting this issue please do so at (not Homebrew/homebrew): https://github.com/homebrew/homebrew-science/issues <https://github.com/homebrew/homebrew-science/issues>
M.S. _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
_______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) <http://pms.sbmu.ac.ir/> Shahid Beheshti University of Medical Sciences (S.B.M.U) <http://www.sbmu.ac.ir/> Tehran, Iran _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
_______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
Hi Fillipo, Debian package is maintained by Wookey. If you use Debian stable then the therion package is usable but quite outdated. Debian testing (next stable) contains slightly adapted Therion 5.3.15 (some patched are included - for example patch for VTK6 etc.) Current stable Therion version (upstream) is 5.3.16 and contains some additional bug fixes. L.
1. 2. 2015 v 13:39, Filippo Gregori <fgregori@inventati.org>:
Hello, There are differences in software if I install it from debian repository? Thank You Filippo
On 01/02/2015 13:11, Christian Sandrini wrote:
Guys
I have updated the brew file and issued a pull request. This might take a while until you will find in the official repository. You can have it directly from my git repository
brew install https://raw.githubusercontent.com/un1x86/homebrew-science/therion/therion.rb <https://raw.githubusercontent.com/un1x86/homebrew-science/therion/therion.rb>
This will install the latest version including VTK6
best Chris
On 01 Feb 2015, at 12:55, Martin Sluka <martinsluka@mac.com> wrote:
if you run from Terminal command “xtherion” what’s happen?
I have problem to open thconfig file. But if I rename thconfig to a.thconfig then it is possible to open.
m.s.
1. 2. 2015 v 9:25, Yones Shariatmadari <yonessh2@gmail.com <mailto:yonessh2@gmail.com>>:
restore mac os 10.10.1 and try to install therion again.
all of program install and work good but therion doesn't run!!! also loch work very well.
==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install 🍺 /usr/local/Cellar/therion/5.3.15: 6 files, 4.4M, built in 2.1 minutes Macs-MacBook-Pro:/ yonesshariatmadari$ xtherion /usr/local/bin/xtherion: line 3: exec: wish: not foundw
On Sun, Feb 1, 2015 at 11:42 AM, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>> wrote: Instalation on Yosemite:
- installed MacTex - installed (but still version 5.3.15 only!) Therion according recipe on wiki from Láďa Blažek successfully :
Martin-iMac:~ martinsluka1$ brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.... <https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.rb> ######################################################################## 100,0% ==> Installing dependencies for therion: fontconfig, vtk ==> Installing therion dependency: fontconfig ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosem... <https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosemite.bottle.3.tar.gz> ######################################################################## 100,0% ==> Pouring fontconfig-2.11.1.yosemite.bottle.3.tar.gz ==> /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3,6M ==> Installing therion dependency: vtk ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yos... <https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yosemite.bottle.tar.gz> ######################################################################## 100,0% ==> Pouring vtk-6.1.0_1.yosemite.bottle.tar.gz ==> Caveats Even without the --with-qt option, you can display native VTK render windows from python. Alternatively, you can integrate the RenderWindowInteractor in PyQt, PySide, Tk or Wx at runtime. Read more: import vtk.qt4; help(vtk.qt4) or import vtk.wx; help(vtk.wx) ==> Summary /usr/local/Cellar/vtk/6.1.0_1: 3005 files, 123M ==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> Already downloaded: /Library/Caches/Homebrew/therion-5.3.15.tar.gz ==> Downloading http://www.lblazek.cz/osx_vtk6.patch <http://www.lblazek.cz/osx_vtk6.patch> ######################################################################## 100,0% ==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install /usr/local/Cellar/therion/5.3.15: 6 files, 4,4M, built in 2.5 minutes Martin-iMac:~ martinsluka1$ xtherion
1. 2. 2015 v 0:22, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>>:
Something wrong is there:
31. 1. 2015 v 20:43, Christian Sandrini <christian.sandrini@me.com <mailto:christian.sandrini@me.com>>:
For now therion still needs VTK5. While by default it tries to install VTK6.
==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> ######################################################################## 100,0% ==> make config-macosx ==> make ^ 1 error generated. make[1]: *** [.././loch/lxSetup.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make: *** [loch/loch] Error 2
READ THIS: http://git.io/brew-troubleshooting <http://git.io/brew-troubleshooting> If reporting this issue please do so at (not Homebrew/homebrew): https://github.com/homebrew/homebrew-science/issues <https://github.com/homebrew/homebrew-science/issues>
M.S. _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
_______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) <http://pms.sbmu.ac.ir/> Shahid Beheshti University of Medical Sciences (S.B.M.U) <http://www.sbmu.ac.ir/> Tehran, Iran _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
_______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
_______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
Thanks, I'm using debian testing 8, are updated. Filippo On 01/02/2015 13:51, Ladislav Blažek wrote:
Hi Fillipo, Debian package is maintained by Wookey. If you use Debian stable then the therion package is usable but quite outdated. Debian testing (next stable) contains slightly adapted Therion 5.3.15 (some patched are included - for example patch for VTK6 etc.) Current stable Therion version (upstream) is 5.3.16 and contains some additional bug fixes. L.
1. 2. 2015 v 13:39, Filippo Gregori <fgregori@inventati.org>:
Hello, There are differences in software if I install it from debian repository? Thank You Filippo
On 01/02/2015 13:11, Christian Sandrini wrote:
Guys
I have updated the brew file and issued a pull request. This might take a while until you will find in the official repository. You can have it directly from my git repository
brew install https://raw.githubusercontent.com/un1x86/homebrew-science/therion/therion.rb <https://raw.githubusercontent.com/un1x86/homebrew-science/therion/therion.rb>
This will install the latest version including VTK6
best Chris
On 01 Feb 2015, at 12:55, Martin Sluka <martinsluka@mac.com> wrote:
if you run from Terminal command “xtherion” what’s happen?
I have problem to open thconfig file. But if I rename thconfig to a.thconfig then it is possible to open.
m.s.
1. 2. 2015 v 9:25, Yones Shariatmadari <yonessh2@gmail.com <mailto:yonessh2@gmail.com>>:
restore mac os 10.10.1 and try to install therion again.
all of program install and work good but therion doesn't run!!! also loch work very well.
==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install 🍺 /usr/local/Cellar/therion/5.3.15: 6 files, 4.4M, built in 2.1 minutes Macs-MacBook-Pro:/ yonesshariatmadari$ xtherion /usr/local/bin/xtherion: line 3: exec: wish: not foundw
On Sun, Feb 1, 2015 at 11:42 AM, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>> wrote: Instalation on Yosemite:
- installed MacTex - installed (but still version 5.3.15 only!) Therion according recipe on wiki from Láďa Blažek successfully :
Martin-iMac:~ martinsluka1$ brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.... <https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.rb> ######################################################################## 100,0% ==> Installing dependencies for therion: fontconfig, vtk ==> Installing therion dependency: fontconfig ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosem... <https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosemite.bottle.3.tar.gz> ######################################################################## 100,0% ==> Pouring fontconfig-2.11.1.yosemite.bottle.3.tar.gz ==> /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3,6M ==> Installing therion dependency: vtk ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yos... <https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yosemite.bottle.tar.gz> ######################################################################## 100,0% ==> Pouring vtk-6.1.0_1.yosemite.bottle.tar.gz ==> Caveats Even without the --with-qt option, you can display native VTK render windows from python. Alternatively, you can integrate the RenderWindowInteractor in PyQt, PySide, Tk or Wx at runtime. Read more: import vtk.qt4; help(vtk.qt4) or import vtk.wx; help(vtk.wx) ==> Summary /usr/local/Cellar/vtk/6.1.0_1: 3005 files, 123M ==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> Already downloaded: /Library/Caches/Homebrew/therion-5.3.15.tar.gz ==> Downloading http://www.lblazek.cz/osx_vtk6.patch <http://www.lblazek.cz/osx_vtk6.patch> ######################################################################## 100,0% ==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install /usr/local/Cellar/therion/5.3.15: 6 files, 4,4M, built in 2.5 minutes Martin-iMac:~ martinsluka1$ xtherion
1. 2. 2015 v 0:22, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>>:
Something wrong is there:
> 31. 1. 2015 v 20:43, Christian Sandrini <christian.sandrini@me.com <mailto:christian.sandrini@me.com>>: > > For now therion still needs VTK5. While by default it tries to install VTK6.
==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> ######################################################################## 100,0% ==> make config-macosx ==> make ^ 1 error generated. make[1]: *** [.././loch/lxSetup.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make: *** [loch/loch] Error 2
READ THIS: http://git.io/brew-troubleshooting <http://git.io/brew-troubleshooting> If reporting this issue please do so at (not Homebrew/homebrew): https://github.com/homebrew/homebrew-science/issues <https://github.com/homebrew/homebrew-science/issues>
M.S. _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
_______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) <http://pms.sbmu.ac.ir/> Shahid Beheshti University of Medical Sciences (S.B.M.U) <http://www.sbmu.ac.ir/> Tehran, Iran _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
_______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
_______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
_______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
m.s.
1. 2. 2015 v 13:51, Ladislav Blažek <ladislav@lblazek.cz>:
Hi Fillipo, Debian package is maintained by Wookey. If you use Debian stable then the therion package is usable but quite outdated. Debian testing (next stable) contains slightly adapted Therion 5.3.15 (some patched are included - for example patch for VTK6 etc.) Current stable Therion version (upstream) is 5.3.16 and contains some additional bug fixes. L.
1. 2. 2015 v 13:39, Filippo Gregori <fgregori@inventati.org>:
Hello, There are differences in software if I install it from debian repository? Thank You Filippo
On 01/02/2015 13:11, Christian Sandrini wrote:
Guys
I have updated the brew file and issued a pull request. This might take a while until you will find in the official repository. You can have it directly from my git repository
brew install https://raw.githubusercontent.com/un1x86/homebrew-science/therion/therion.rb <https://raw.githubusercontent.com/un1x86/homebrew-science/therion/therion.rb>
This will install the latest version including VTK6
best Chris
On 01 Feb 2015, at 12:55, Martin Sluka <martinsluka@mac.com> wrote:
if you run from Terminal command “xtherion” what’s happen?
I have problem to open thconfig file. But if I rename thconfig to a.thconfig then it is possible to open.
m.s.
1. 2. 2015 v 9:25, Yones Shariatmadari <yonessh2@gmail.com <mailto:yonessh2@gmail.com>>:
restore mac os 10.10.1 and try to install therion again.
all of program install and work good but therion doesn't run!!! also loch work very well.
==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install 🍺 /usr/local/Cellar/therion/5.3.15: 6 files, 4.4M, built in 2.1 minutes Macs-MacBook-Pro:/ yonesshariatmadari$ xtherion /usr/local/bin/xtherion: line 3: exec: wish: not foundw
On Sun, Feb 1, 2015 at 11:42 AM, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>> wrote: Instalation on Yosemite:
- installed MacTex - installed (but still version 5.3.15 only!) Therion according recipe on wiki from Láďa Blažek successfully :
Martin-iMac:~ martinsluka1$ brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.... <https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.rb> ######################################################################## 100,0% ==> Installing dependencies for therion: fontconfig, vtk ==> Installing therion dependency: fontconfig ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosem... <https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosemite.bottle.3.tar.gz> ######################################################################## 100,0% ==> Pouring fontconfig-2.11.1.yosemite.bottle.3.tar.gz ==> /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3,6M ==> Installing therion dependency: vtk ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yos... <https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yosemite.bottle.tar.gz> ######################################################################## 100,0% ==> Pouring vtk-6.1.0_1.yosemite.bottle.tar.gz ==> Caveats Even without the --with-qt option, you can display native VTK render windows from python. Alternatively, you can integrate the RenderWindowInteractor in PyQt, PySide, Tk or Wx at runtime. Read more: import vtk.qt4; help(vtk.qt4) or import vtk.wx; help(vtk.wx) ==> Summary /usr/local/Cellar/vtk/6.1.0_1: 3005 files, 123M ==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> Already downloaded: /Library/Caches/Homebrew/therion-5.3.15.tar.gz ==> Downloading http://www.lblazek.cz/osx_vtk6.patch <http://www.lblazek.cz/osx_vtk6.patch> ######################################################################## 100,0% ==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install /usr/local/Cellar/therion/5.3.15: 6 files, 4,4M, built in 2.5 minutes Martin-iMac:~ martinsluka1$ xtherion
1. 2. 2015 v 0:22, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>>:
Something wrong is there:
> 31. 1. 2015 v 20:43, Christian Sandrini <christian.sandrini@me.com <mailto:christian.sandrini@me.com>>: > > For now therion still needs VTK5. While by default it tries to install VTK6.
==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> ######################################################################## 100,0% ==> make config-macosx ==> make ^ 1 error generated. make[1]: *** [.././loch/lxSetup.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make: *** [loch/loch] Error 2
READ THIS: http://git.io/brew-troubleshooting <http://git.io/brew-troubleshooting> If reporting this issue please do so at (not Homebrew/homebrew): https://github.com/homebrew/homebrew-science/issues <https://github.com/homebrew/homebrew-science/issues>
M.S. _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
_______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) <http://pms.sbmu.ac.ir/> Shahid Beheshti University of Medical Sciences (S.B.M.U) <http://www.sbmu.ac.ir/> Tehran, Iran _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
_______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
_______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
_______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
Hi, if you need urgently install therion 5.3.16 you can use updated formulae from my github repository- just follow my tutorial on wiki pages http://therion.speleo.sk/wiki/doku.php/os-tips:osx <http://therion.speleo.sk/wiki/doku.php/os-tips:osx> I will try to send pull request but need to check guidelines. L.
1. 2. 2015 v 12:55, Martin Sluka <martinsluka@mac.com>:
if you run from Terminal command “xtherion” what’s happen?
I have problem to open thconfig file. But if I rename thconfig to a.thconfig then it is possible to open.
m.s.
1. 2. 2015 v 9:25, Yones Shariatmadari <yonessh2@gmail.com <mailto:yonessh2@gmail.com>>:
restore mac os 10.10.1 and try to install therion again.
all of program install and work good but therion doesn't run!!! also loch work very well.
==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install 🍺 /usr/local/Cellar/therion/5.3.15: 6 files, 4.4M, built in 2.1 minutes Macs-MacBook-Pro:/ yonesshariatmadari$ xtherion /usr/local/bin/xtherion: line 3: exec: wish: not foundw
On Sun, Feb 1, 2015 at 11:42 AM, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>> wrote: Instalation on Yosemite:
- installed MacTex - installed (but still version 5.3.15 only!) Therion according recipe on wiki from Láďa Blažek successfully :
Martin-iMac:~ martinsluka1$ brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.... <https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.rb> ######################################################################## 100,0% ==> Installing dependencies for therion: fontconfig, vtk ==> Installing therion dependency: fontconfig ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosem... <https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosemite.bottle.3.tar.gz> ######################################################################## 100,0% ==> Pouring fontconfig-2.11.1.yosemite.bottle.3.tar.gz ==> /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3,6M ==> Installing therion dependency: vtk ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yos... <https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yosemite.bottle.tar.gz> ######################################################################## 100,0% ==> Pouring vtk-6.1.0_1.yosemite.bottle.tar.gz ==> Caveats Even without the --with-qt option, you can display native VTK render windows from python. Alternatively, you can integrate the RenderWindowInteractor in PyQt, PySide, Tk or Wx at runtime. Read more: import vtk.qt4; help(vtk.qt4) or import vtk.wx; help(vtk.wx) ==> Summary /usr/local/Cellar/vtk/6.1.0_1: 3005 files, 123M ==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> Already downloaded: /Library/Caches/Homebrew/therion-5.3.15.tar.gz ==> Downloading http://www.lblazek.cz/osx_vtk6.patch <http://www.lblazek.cz/osx_vtk6.patch> ######################################################################## 100,0% ==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install /usr/local/Cellar/therion/5.3.15: 6 files, 4,4M, built in 2.5 minutes Martin-iMac:~ martinsluka1$ xtherion
1. 2. 2015 v 0:22, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>>:
Something wrong is there:
31. 1. 2015 v 20:43, Christian Sandrini <christian.sandrini@me.com <mailto:christian.sandrini@me.com>>:
For now therion still needs VTK5. While by default it tries to install VTK6.
==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> ######################################################################## 100,0% ==> make config-macosx ==> make ^ 1 error generated. make[1]: *** [.././loch/lxSetup.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make: *** [loch/loch] Error 2
READ THIS: http://git.io/brew-troubleshooting <http://git.io/brew-troubleshooting> If reporting this issue please do so at (not Homebrew/homebrew): https://github.com/homebrew/homebrew-science/issues <https://github.com/homebrew/homebrew-science/issues>
M.S. _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
_______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) <http://pms.sbmu.ac.ir/> Shahid Beheshti University of Medical Sciences (S.B.M.U) <http://www.sbmu.ac.ir/> Tehran, Iran _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
Hi Ladislav Please use prober git merging. It is outdated. I have already done a pull request for the 5.3.16 version You can happily contribute to my repository https://github.com/un1x86/homebrew-science/blob/therion/therion.rb <https://github.com/un1x86/homebrew-science/blob/therion/therion.rb> Best Chris
On 01 Feb 2015, at 13:12, Ladislav Blažek <ladislav@lblazek.cz> wrote:
Hi, if you need urgently install therion 5.3.16 you can use updated formulae from my github repository- just follow my tutorial on wiki pages http://therion.speleo.sk/wiki/doku.php/os-tips:osx <http://therion.speleo.sk/wiki/doku.php/os-tips:osx>
I will try to send pull request but need to check guidelines.
L.
1. 2. 2015 v 12:55, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>>:
if you run from Terminal command “xtherion” what’s happen?
I have problem to open thconfig file. But if I rename thconfig to a.thconfig then it is possible to open.
m.s.
1. 2. 2015 v 9:25, Yones Shariatmadari <yonessh2@gmail.com <mailto:yonessh2@gmail.com>>:
restore mac os 10.10.1 and try to install therion again.
all of program install and work good but therion doesn't run!!! also loch work very well.
==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install 🍺 /usr/local/Cellar/therion/5.3.15: 6 files, 4.4M, built in 2.1 minutes Macs-MacBook-Pro:/ yonesshariatmadari$ xtherion /usr/local/bin/xtherion: line 3: exec: wish: not foundw
On Sun, Feb 1, 2015 at 11:42 AM, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>> wrote: Instalation on Yosemite:
- installed MacTex - installed (but still version 5.3.15 only!) Therion according recipe on wiki from Láďa Blažek successfully :
Martin-iMac:~ martinsluka1$ brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.... <https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.rb> ######################################################################## 100,0% ==> Installing dependencies for therion: fontconfig, vtk ==> Installing therion dependency: fontconfig ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosem... <https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosemite.bottle.3.tar.gz> ######################################################################## 100,0% ==> Pouring fontconfig-2.11.1.yosemite.bottle.3.tar.gz ==> /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3,6M ==> Installing therion dependency: vtk ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yos... <https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yosemite.bottle.tar.gz> ######################################################################## 100,0% ==> Pouring vtk-6.1.0_1.yosemite.bottle.tar.gz ==> Caveats Even without the --with-qt option, you can display native VTK render windows from python. Alternatively, you can integrate the RenderWindowInteractor in PyQt, PySide, Tk or Wx at runtime. Read more: import vtk.qt4; help(vtk.qt4) or import vtk.wx; help(vtk.wx) ==> Summary /usr/local/Cellar/vtk/6.1.0_1: 3005 files, 123M ==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> Already downloaded: /Library/Caches/Homebrew/therion-5.3.15.tar.gz ==> Downloading http://www.lblazek.cz/osx_vtk6.patch <http://www.lblazek.cz/osx_vtk6.patch> ######################################################################## 100,0% ==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install /usr/local/Cellar/therion/5.3.15: 6 files, 4,4M, built in 2.5 minutes Martin-iMac:~ martinsluka1$ xtherion
1. 2. 2015 v 0:22, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>>:
Something wrong is there:
31. 1. 2015 v 20:43, Christian Sandrini <christian.sandrini@me.com <mailto:christian.sandrini@me.com>>:
For now therion still needs VTK5. While by default it tries to install VTK6.
==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> ######################################################################## 100,0% ==> make config-macosx ==> make ^ 1 error generated. make[1]: *** [.././loch/lxSetup.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make: *** [loch/loch] Error 2
READ THIS: http://git.io/brew-troubleshooting <http://git.io/brew-troubleshooting> If reporting this issue please do so at (not Homebrew/homebrew): https://github.com/homebrew/homebrew-science/issues <https://github.com/homebrew/homebrew-science/issues>
M.S. _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
_______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) <http://pms.sbmu.ac.ir/> Shahid Beheshti University of Medical Sciences (S.B.M.U) <http://www.sbmu.ac.ir/> Tehran, Iran _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion
_______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
Hi Chris, wiki page updated with link to your repository. I used my version for 5.3.15 where additional VTK6 patch was needed for OS X Yosemite. I am not programmer and it was for first time I used git/github L.
1. 2. 2015 v 13:19, Christian Sandrini <christian.sandrini@me.com>:
Hi Ladislav
Please use prober git merging. It is outdated. I have already done a pull request for the 5.3.16 version
You can happily contribute to my repository
https://github.com/un1x86/homebrew-science/blob/therion/therion.rb <https://github.com/un1x86/homebrew-science/blob/therion/therion.rb>
Best Chris
On 01 Feb 2015, at 13:12, Ladislav Blažek <ladislav@lblazek.cz <mailto:ladislav@lblazek.cz>> wrote:
Hi, if you need urgently install therion 5.3.16 you can use updated formulae from my github repository- just follow my tutorial on wiki pages http://therion.speleo.sk/wiki/doku.php/os-tips:osx <http://therion.speleo.sk/wiki/doku.php/os-tips:osx>
I will try to send pull request but need to check guidelines.
L.
1. 2. 2015 v 12:55, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>>:
if you run from Terminal command “xtherion” what’s happen?
I have problem to open thconfig file. But if I rename thconfig to a.thconfig then it is possible to open.
m.s.
1. 2. 2015 v 9:25, Yones Shariatmadari <yonessh2@gmail.com <mailto:yonessh2@gmail.com>>:
restore mac os 10.10.1 and try to install therion again.
all of program install and work good but therion doesn't run!!! also loch work very well.
==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install 🍺 /usr/local/Cellar/therion/5.3.15: 6 files, 4.4M, built in 2.1 minutes Macs-MacBook-Pro:/ yonesshariatmadari$ xtherion /usr/local/bin/xtherion: line 3: exec: wish: not foundw
On Sun, Feb 1, 2015 at 11:42 AM, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>> wrote: Instalation on Yosemite:
- installed MacTex - installed (but still version 5.3.15 only!) Therion according recipe on wiki from Láďa Blažek successfully :
Martin-iMac:~ martinsluka1$ brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.... <https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.rb> ######################################################################## 100,0% ==> Installing dependencies for therion: fontconfig, vtk ==> Installing therion dependency: fontconfig ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosem... <https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosemite.bottle.3.tar.gz> ######################################################################## 100,0% ==> Pouring fontconfig-2.11.1.yosemite.bottle.3.tar.gz ==> /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3,6M ==> Installing therion dependency: vtk ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yos... <https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yosemite.bottle.tar.gz> ######################################################################## 100,0% ==> Pouring vtk-6.1.0_1.yosemite.bottle.tar.gz ==> Caveats Even without the --with-qt option, you can display native VTK render windows from python. Alternatively, you can integrate the RenderWindowInteractor in PyQt, PySide, Tk or Wx at runtime. Read more: import vtk.qt4; help(vtk.qt4) or import vtk.wx; help(vtk.wx) ==> Summary /usr/local/Cellar/vtk/6.1.0_1: 3005 files, 123M ==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> Already downloaded: /Library/Caches/Homebrew/therion-5.3.15.tar.gz ==> Downloading http://www.lblazek.cz/osx_vtk6.patch <http://www.lblazek.cz/osx_vtk6.patch> ######################################################################## 100,0% ==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install /usr/local/Cellar/therion/5.3.15: 6 files, 4,4M, built in 2.5 minutes Martin-iMac:~ martinsluka1$ xtherion
1. 2. 2015 v 0:22, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>>:
Something wrong is there:
31. 1. 2015 v 20:43, Christian Sandrini <christian.sandrini@me.com <mailto:christian.sandrini@me.com>>:
For now therion still needs VTK5. While by default it tries to install VTK6.
==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> ######################################################################## 100,0% ==> make config-macosx ==> make ^ 1 error generated. make[1]: *** [.././loch/lxSetup.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make: *** [loch/loch] Error 2
READ THIS: http://git.io/brew-troubleshooting <http://git.io/brew-troubleshooting> If reporting this issue please do so at (not Homebrew/homebrew): https://github.com/homebrew/homebrew-science/issues <https://github.com/homebrew/homebrew-science/issues>
M.S. _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
_______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) <http://pms.sbmu.ac.ir/> Shahid Beheshti University of Medical Sciences (S.B.M.U) <http://www.sbmu.ac.ir/> Tehran, Iran _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
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_______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
No worries but I think in the wiki they should rather use the official one from the homebrew repository. brew update brew install homebrew/science/therion But currently homebrew/science/therion has only version 5.3.15 until the pull request has been accepted. best Chris
On 01 Feb 2015, at 13:32, Ladislav Blažek <ladislav@lblazek.cz> wrote:
Hi Chris, wiki page updated with link to your repository. I used my version for 5.3.15 where additional VTK6 patch was needed for OS X Yosemite. I am not programmer and it was for first time I used git/github <smile.png>
L.
1. 2. 2015 v 13:19, Christian Sandrini <christian.sandrini@me.com <mailto:christian.sandrini@me.com>>:
Hi Ladislav
Please use prober git merging. It is outdated. I have already done a pull request for the 5.3.16 version
You can happily contribute to my repository
https://github.com/un1x86/homebrew-science/blob/therion/therion.rb <https://github.com/un1x86/homebrew-science/blob/therion/therion.rb>
Best Chris
On 01 Feb 2015, at 13:12, Ladislav Blažek <ladislav@lblazek.cz <mailto:ladislav@lblazek.cz>> wrote:
Hi, if you need urgently install therion 5.3.16 you can use updated formulae from my github repository- just follow my tutorial on wiki pages http://therion.speleo.sk/wiki/doku.php/os-tips:osx <http://therion.speleo.sk/wiki/doku.php/os-tips:osx>
I will try to send pull request but need to check guidelines.
L.
1. 2. 2015 v 12:55, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>>:
if you run from Terminal command “xtherion” what’s happen?
I have problem to open thconfig file. But if I rename thconfig to a.thconfig then it is possible to open.
m.s.
1. 2. 2015 v 9:25, Yones Shariatmadari <yonessh2@gmail.com <mailto:yonessh2@gmail.com>>:
restore mac os 10.10.1 and try to install therion again.
all of program install and work good but therion doesn't run!!! also loch work very well.
==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install 🍺 /usr/local/Cellar/therion/5.3.15: 6 files, 4.4M, built in 2.1 minutes Macs-MacBook-Pro:/ yonesshariatmadari$ xtherion /usr/local/bin/xtherion: line 3: exec: wish: not foundw
On Sun, Feb 1, 2015 at 11:42 AM, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>> wrote: Instalation on Yosemite:
- installed MacTex - installed (but still version 5.3.15 only!) Therion according recipe on wiki from Láďa Blažek successfully :
Martin-iMac:~ martinsluka1$ brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.... <https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.rb> ######################################################################## 100,0% ==> Installing dependencies for therion: fontconfig, vtk ==> Installing therion dependency: fontconfig ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosem... <https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosemite.bottle.3.tar.gz> ######################################################################## 100,0% ==> Pouring fontconfig-2.11.1.yosemite.bottle.3.tar.gz ==> /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3,6M ==> Installing therion dependency: vtk ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yos... <https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yosemite.bottle.tar.gz> ######################################################################## 100,0% ==> Pouring vtk-6.1.0_1.yosemite.bottle.tar.gz ==> Caveats Even without the --with-qt option, you can display native VTK render windows from python. Alternatively, you can integrate the RenderWindowInteractor in PyQt, PySide, Tk or Wx at runtime. Read more: import vtk.qt4; help(vtk.qt4) or import vtk.wx; help(vtk.wx) ==> Summary /usr/local/Cellar/vtk/6.1.0_1: 3005 files, 123M ==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> Already downloaded: /Library/Caches/Homebrew/therion-5.3.15.tar.gz ==> Downloading http://www.lblazek.cz/osx_vtk6.patch <http://www.lblazek.cz/osx_vtk6.patch> ######################################################################## 100,0% ==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install /usr/local/Cellar/therion/5.3.15: 6 files, 4,4M, built in 2.5 minutes Martin-iMac:~ martinsluka1$ xtherion
1. 2. 2015 v 0:22, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>>:
Something wrong is there:
> 31. 1. 2015 v 20:43, Christian Sandrini <christian.sandrini@me.com <mailto:christian.sandrini@me.com>>: > > For now therion still needs VTK5. While by default it tries to install VTK6.
==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> ######################################################################## 100,0% ==> make config-macosx ==> make ^ 1 error generated. make[1]: *** [.././loch/lxSetup.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make: *** [loch/loch] Error 2
READ THIS: http://git.io/brew-troubleshooting <http://git.io/brew-troubleshooting> If reporting this issue please do so at (not Homebrew/homebrew): https://github.com/homebrew/homebrew-science/issues <https://github.com/homebrew/homebrew-science/issues>
M.S. _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
_______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) <http://pms.sbmu.ac.ir/> Shahid Beheshti University of Medical Sciences (S.B.M.U) <http://www.sbmu.ac.ir/> Tehran, Iran _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
_______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
_______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion
_______________________________________________ Therion mailing list Therion@speleo.sk http://mailman.speleo.sk/mailman/listinfo/therion
Official version (5.3.15) is broken - you need additional patches for Yosemite and VTK6 to be bale to compile Loch. Actually I sent you mail when I adapted Olly’s patch and included it in my formula fork. L.
1. 2. 2015 v 13:35, Christian Sandrini <christian.sandrini@me.com>:
No worries but I think in the wiki they should rather use the official one from the homebrew repository.
brew update brew install homebrew/science/therion
But currently homebrew/science/therion has only version 5.3.15 until the pull request has been accepted.
best Chris
On 01 Feb 2015, at 13:32, Ladislav Blažek <ladislav@lblazek.cz <mailto:ladislav@lblazek.cz>> wrote:
Hi Chris, wiki page updated with link to your repository. I used my version for 5.3.15 where additional VTK6 patch was needed for OS X Yosemite. I am not programmer and it was for first time I used git/github <smile.png>
L.
1. 2. 2015 v 13:19, Christian Sandrini <christian.sandrini@me.com <mailto:christian.sandrini@me.com>>:
Hi Ladislav
Please use prober git merging. It is outdated. I have already done a pull request for the 5.3.16 version
You can happily contribute to my repository
https://github.com/un1x86/homebrew-science/blob/therion/therion.rb <https://github.com/un1x86/homebrew-science/blob/therion/therion.rb>
Best Chris
On 01 Feb 2015, at 13:12, Ladislav Blažek <ladislav@lblazek.cz <mailto:ladislav@lblazek.cz>> wrote:
Hi, if you need urgently install therion 5.3.16 you can use updated formulae from my github repository- just follow my tutorial on wiki pages http://therion.speleo.sk/wiki/doku.php/os-tips:osx <http://therion.speleo.sk/wiki/doku.php/os-tips:osx>
I will try to send pull request but need to check guidelines.
L.
1. 2. 2015 v 12:55, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>>:
if you run from Terminal command “xtherion” what’s happen?
I have problem to open thconfig file. But if I rename thconfig to a.thconfig then it is possible to open.
m.s.
1. 2. 2015 v 9:25, Yones Shariatmadari <yonessh2@gmail.com <mailto:yonessh2@gmail.com>>:
restore mac os 10.10.1 and try to install therion again.
all of program install and work good but therion doesn't run!!! also loch work very well.
==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install 🍺 /usr/local/Cellar/therion/5.3.15: 6 files, 4.4M, built in 2.1 minutes Macs-MacBook-Pro:/ yonesshariatmadari$ xtherion /usr/local/bin/xtherion: line 3: exec: wish: not foundw
On Sun, Feb 1, 2015 at 11:42 AM, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>> wrote: Instalation on Yosemite:
- installed MacTex - installed (but still version 5.3.15 only!) Therion according recipe on wiki from Láďa Blažek successfully :
Martin-iMac:~ martinsluka1$ brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.... <https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.rb> ######################################################################## 100,0% ==> Installing dependencies for therion: fontconfig, vtk ==> Installing therion dependency: fontconfig ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosem... <https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosemite.bottle.3.tar.gz> ######################################################################## 100,0% ==> Pouring fontconfig-2.11.1.yosemite.bottle.3.tar.gz ==> /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3,6M ==> Installing therion dependency: vtk ==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yos... <https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yosemite.bottle.tar.gz> ######################################################################## 100,0% ==> Pouring vtk-6.1.0_1.yosemite.bottle.tar.gz ==> Caveats Even without the --with-qt option, you can display native VTK render windows from python. Alternatively, you can integrate the RenderWindowInteractor in PyQt, PySide, Tk or Wx at runtime. Read more: import vtk.qt4; help(vtk.qt4) or import vtk.wx; help(vtk.wx) ==> Summary /usr/local/Cellar/vtk/6.1.0_1: 3005 files, 123M ==> Installing therion ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> Already downloaded: /Library/Caches/Homebrew/therion-5.3.15.tar.gz ==> Downloading http://www.lblazek.cz/osx_vtk6.patch <http://www.lblazek.cz/osx_vtk6.patch> ######################################################################## 100,0% ==> Patching patching file loch/lxData.cxx Hunk #1 succeeded at 540 (offset 5 lines). Hunk #2 succeeded at 582 (offset 5 lines). patching file loch/Makefile ==> make config-macosx ==> make ==> make install /usr/local/Cellar/therion/5.3.15: 6 files, 4,4M, built in 2.5 minutes Martin-iMac:~ martinsluka1$ xtherion
> 1. 2. 2015 v 0:22, Martin Sluka <martinsluka@mac.com <mailto:martinsluka@mac.com>>: > > Something wrong is there: > >> 31. 1. 2015 v 20:43, Christian Sandrini <christian.sandrini@me.com <mailto:christian.sandrini@me.com>>: >> >> For now therion still needs VTK5. While by default it tries to install VTK6. > > ==> Installing therion > ==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz <http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz> > ######################################################################## 100,0% > ==> make config-macosx > ==> make > ^ > 1 error generated. > make[1]: *** [.././loch/lxSetup.o] Error 1 > make[1]: *** Waiting for unfinished jobs.... > make: *** [loch/loch] Error 2 > > READ THIS: http://git.io/brew-troubleshooting <http://git.io/brew-troubleshooting> > If reporting this issue please do so at (not Homebrew/homebrew): > https://github.com/homebrew/homebrew-science/issues <https://github.com/homebrew/homebrew-science/issues> > > M.S. > _______________________________________________ > Therion mailing list > Therion@speleo.sk <mailto:Therion@speleo.sk> > http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
_______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
-- Yones Shariatmadari Master Student , Department of BioStatistics School of Paramedical Science (PMS) <http://pms.sbmu.ac.ir/> Shahid Beheshti University of Medical Sciences (S.B.M.U) <http://www.sbmu.ac.ir/> Tehran, Iran _______________________________________________ Therion mailing list Therion@speleo.sk <mailto:Therion@speleo.sk> http://mailman.speleo.sk/mailman/listinfo/therion <http://mailman.speleo.sk/mailman/listinfo/therion>
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participants (5)
-
Christian Sandrini -
Filippo Gregori -
Ladislav Blažek -
Martin Sluka -
Yones Shariatmadari