Hi  Friends
thank you for your interest my friends.
but i have an error in installing therion.

i use mac os 10.10.1 !

type the following brew in terminal :


the result is :

Macs-MacBook-Pro:~ yonesshariatmadari$ brew install https://raw.githubusercontent.com/ladislavb/homebrew-science/master/therion.rb 

######################################################################## 100.0%

Warning: You have an outdated version of /usr/bin/install_name_tool installed.

This will cause binary package installations to fail.

This can happen if you install osx-gcc-installer or RailsInstaller.

To restore it, you must reinstall OS X or restore the binary from

the OS packages.

==> Installing dependencies for therion: libpng, freetype, libtool, jpeg, xz, imagemagick, lcdf-typetools, boost, fontconfig, szip, hdf5, libtiff, vtk, wxmac

==> Installing therion dependency: libpng

==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/libpng-1.6.16.yosemite.bottle.tar.gz

######################################################################## 100.0%

==> Pouring libpng-1.6.16.yosemite.bottle.tar.gz

/usr/bin/install_name_tool: object: /usr/local/Cellar/libpng/1.6.16/bin/pngfix malformed object (unknown load command 9)

Error: Failed to fix install names

The formula built, but you may encounter issues using it or linking other

formula against it.

==> Summary

🍺  /usr/local/Cellar/libpng/1.6.16: 17 files, 1.3M

==> Installing therion dependency: freetype

==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/freetype-2.5.5.yosemite.bottle.tar.gz

######################################################################## 100.0%

==> Pouring freetype-2.5.5.yosemite.bottle.tar.gz

/usr/bin/install_name_tool: object: /usr/local/Cellar/freetype/2.5.5/lib/libfreetype.6.dylib malformed object (unknown load command 8)

Error: Failed to fix install names

The formula built, but you may encounter issues using it or linking other

formula against it.

==> Summary

🍺  /usr/local/Cellar/freetype/2.5.5: 60 files, 2.6M

==> Installing therion dependency: libtool

==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/libtool-2.4.5.yosemite.bottle.tar.gz

######################################################################## 100.0%

==> Pouring libtool-2.4.5.yosemite.bottle.tar.gz

==> Caveats

In order to prevent conflicts with Apple's own libtool we have prepended a "g"

so, you have instead: glibtool and glibtoolize.

/usr/bin/install_name_tool: object: /usr/local/Cellar/libtool/2.4.5/lib/libltdl.7.dylib malformed object (unknown load command 8)

Error: Failed to fix install names

The formula built, but you may encounter issues using it or linking other

formula against it.

==> Summary

🍺  /usr/local/Cellar/libtool/2.4.5: 69 files, 3.8M

==> Installing therion dependency: jpeg

==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/jpeg-8d.yosemite.bottle.2.tar.gz

######################################################################## 100.0%

==> Pouring jpeg-8d.yosemite.bottle.2.tar.gz

/usr/bin/install_name_tool: object: /usr/local/Cellar/jpeg/8d/bin/cjpeg malformed object (unknown load command 9)

Error: Failed to fix install names

The formula built, but you may encounter issues using it or linking other

formula against it.

==> Summary

🍺  /usr/local/Cellar/jpeg/8d: 18 files, 776K

==> Installing therion dependency: xz

==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/xz-5.2.0.yosemite.bottle.tar.gz

######################################################################## 100.0%

==> Pouring xz-5.2.0.yosemite.bottle.tar.gz

/usr/bin/install_name_tool: object: /usr/local/Cellar/xz/5.2.0/bin/lzmadec malformed object (unknown load command 9)

Error: Failed to fix install names

The formula built, but you may encounter issues using it or linking other

formula against it.

==> Summary

🍺  /usr/local/Cellar/xz/5.2.0: 59 files, 1.7M

==> Installing therion dependency: imagemagick

==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/imagemagick-6.9.0-3.yosemite.bottle.tar.gz

######################################################################## 100.0%

==> Pouring imagemagick-6.9.0-3.yosemite.bottle.tar.gz

/usr/bin/install_name_tool: object: /usr/local/Cellar/imagemagick/6.9.0-3/bin/animate malformed object (unknown load command 9)

Error: Failed to fix install names

The formula built, but you may encounter issues using it or linking other

formula against it.

==> Summary

🍺  /usr/local/Cellar/imagemagick/6.9.0-3: 1440 files, 22M

==> Installing therion dependency: lcdf-typetools

couldn't understand kern.osversion `14.0.0'

==> Downloading http://www.lcdf.org/type/lcdf-typetools-2.104.tar.gz

######################################################################## 100.0%

==> ./configure --prefix=/usr/local/Cellar/lcdf-typetools/2.104 --without-kpathsea

==> make install

🍺  /usr/local/Cellar/lcdf-typetools/2.104: 29 files, 4.3M, built in 5.5 minutes

==> Installing therion dependency: boost

==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/boost-1.57.0.yosemite.bottle.tar.gz

######################################################################## 100.0%

==> Pouring boost-1.57.0.yosemite.bottle.tar.gz

/usr/bin/install_name_tool: object: /usr/local/Cellar/boost/1.57.0/lib/libboost_atomic-mt.dylib malformed object (unknown load command 8)

Error: Failed to fix install names

The formula built, but you may encounter issues using it or linking other

formula against it.

==> Summary

🍺  /usr/local/Cellar/boost/1.57.0: 10572 files, 439M

==> Installing therion dependency: fontconfig

==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/fontconfig-2.11.1.yosemite.bottle.3.tar.gz

######################################################################## 100.0%

==> Pouring fontconfig-2.11.1.yosemite.bottle.3.tar.gz

/usr/bin/install_name_tool: object: /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache malformed object (unknown load command 9)

Error: Failed to fix install names

The formula built, but you may encounter issues using it or linking other

formula against it.

==> /usr/local/Cellar/fontconfig/2.11.1/bin/fc-cache -frv





^\Warning: The post-install step did not complete successfully

You can try again using `brew postinstall fontconfig`

==> Summary

🍺  /usr/local/Cellar/fontconfig/2.11.1: 448 files, 3.6M

==> Installing therion dependency: szip

couldn't understand kern.osversion `14.0.0'

==> Downloading http://www.hdfgroup.org/ftp/lib-external/szip/2.1/src/szip-2.1.tar.gz

######################################################################## 100.0%

==> ./configure --prefix=/usr/local/Cellar/szip/2.1

==> make install

🍺  /usr/local/Cellar/szip/2.1: 9 files, 132K, built in 28 seconds

==> Installing therion dependency: hdf5

==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/hdf5-1.8.14.yosemite.bottle.tar.gz

######################################################################## 100.0%

==> Pouring hdf5-1.8.14.yosemite.bottle.tar.gz

/usr/bin/install_name_tool: object: /usr/local/Cellar/hdf5/1.8.14/bin/gif2h5 malformed object (unknown load command 9)

Error: Failed to fix install names

The formula built, but you may encounter issues using it or linking other

formula against it.

==> Summary

🍺  /usr/local/Cellar/hdf5/1.8.14: 118 files, 9.9M

==> Installing therion dependency: libtiff

==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/libtiff-4.0.3.yosemite.bottle.tar.gz

######################################################################## 100.0%

==> Pouring libtiff-4.0.3.yosemite.bottle.tar.gz

/usr/bin/install_name_tool: object: /usr/local/Cellar/libtiff/4.0.3/bin/bmp2tiff malformed object (unknown load command 9)

Error: Failed to fix install names

The formula built, but you may encounter issues using it or linking other

formula against it.

==> Summary

🍺  /usr/local/Cellar/libtiff/4.0.3: 254 files, 3.8M

==> Installing therion dependency: vtk

==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/science/vtk-6.1.0_1.yosemite.bottle.tar.gz

######################################################################## 100.0%

==> Pouring vtk-6.1.0_1.yosemite.bottle.tar.gz

==> Caveats

Even without the --with-qt option, you can display native VTK render windows

from python. Alternatively, you can integrate the RenderWindowInteractor

in PyQt, PySide, Tk or Wx at runtime. Read more:

    import vtk.qt4; help(vtk.qt4) or import vtk.wx; help(vtk.wx)



Python modules have been installed and Homebrew's site-packages is not

in your Python sys.path, so you will not be able to import the modules

this formula installed. If you plan to develop with these modules,

please run:

  mkdir -p /Users/yonesshariatmadari/Library/Python/2.7/lib/python/site-packages

  echo 'import site; site.addsitedir("/usr/local/lib/python2.7/site-packages")' >> /Users/yonesshariatmadari/Library/Python/2.7/lib/python/site-packages/homebrew.pth

/usr/bin/install_name_tool: object: /usr/local/Cellar/vtk/6.1.0_1/bin/vtkHashSource-6.1 malformed object (unknown load command 9)

Error: Failed to fix install names

The formula built, but you may encounter issues using it or linking other

formula against it.

==> Summary

🍺  /usr/local/Cellar/vtk/6.1.0_1: 3005 files, 123M

==> Installing therion dependency: wxmac

==> Downloading https://downloads.sf.net/project/machomebrew/Bottles/wxmac-3.0.2.yosemite.bottle.9.tar.gz

######################################################################## 100.0%

==> Pouring wxmac-3.0.2.yosemite.bottle.9.tar.gz

/usr/bin/install_name_tool: for architecture i386 object: /usr/local/Cellar/wxmac/3.0.2/bin/wxrc-3.0 malformed object (unknown load command 9)

Error: Failed to fix install names

The formula built, but you may encounter issues using it or linking other

formula against it.

==> Summary

🍺  /usr/local/Cellar/wxmac/3.0.2: 777 files, 41M

==> Installing therion

couldn't understand kern.osversion `14.0.0'

==> Downloading http://therion.speleo.sk/downloads/therion-5.3.15.tar.gz

######################################################################## 100.0%

==> Downloading http://www.lblazek.cz/osx_vtk6.patch

######################################################################## 100.0%

==> Patching

patching file loch/lxData.cxx

Hunk #1 succeeded at 540 (offset 5 lines).

Hunk #2 succeeded at 582 (offset 5 lines).

patching file loch/Makefile

==> make config-macosx

==> make

couldn't understand kern.osversion `14.0.0'

loch/lxFile.cxx: In member function ‘void lxFile::ImportPLT(const char*)’:

loch/lxFile.cxx:755: error: ‘getline’ was not declared in this scope

make: *** [extern/lxFile.o] Error 1

make: *** Waiting for unfinished jobs....

couldn't understand kern.osversion `14.0.0'


READ THIS: http://git.io/brew-troubleshooting




what should i do for this error, please help me.

thank you 
Y.SH

On Sat, Jan 31, 2015 at 2:03 AM, Martin Sluka <martinsluka@mac.com> wrote:
It is on my computer (OSX 10.8.5):

as written in wiki:

brew tap homebrew/science


m.s.


30. 1. 2015 v 22:23, Yones Shariatmadari <yonessh2@gmail.com>:

Hi

i use homebrew , it is very good for checking but that error is in terminal !!!
problem not solve.

please check this:

Macs-MacBook-Pro:therion yonesshariatmadari$ brew install therion
Error: No available formula for therion 
Searching formulae...
Searching taps...


On Fri, Jan 30, 2015 at 3:37 PM, Martin Sluka <martinsluka@mac.com> wrote:

30. 1. 2015 v 12:05, Yones Shariatmadari <yonessh2@gmail.com>:

what should i do?
please help me


Hi,

try to use HomeBrew instalation:

- download and install HomeBrew - http://brew.sh

- in terminal: brew install therion

m. 

_______________________________________________
Therion mailing list
Therion@speleo.sk
http://mailman.speleo.sk/mailman/listinfo/therion




--
Yones Shariatmadari 
Master Student , Department of BioStatistics 
School of Paramedical Science (PMS)
Shahid Beheshti University of Medical Sciences (S.B.M.U)
Tehran, Iran
_______________________________________________
Therion mailing list
Therion@speleo.sk
http://mailman.speleo.sk/mailman/listinfo/therion


_______________________________________________
Therion mailing list
Therion@speleo.sk
http://mailman.speleo.sk/mailman/listinfo/therion




--
Yones Shariatmadari 
Master Student , Department of BioStatistics 
School of Paramedical Science (PMS)
Shahid Beheshti University of Medical Sciences (S.B.M.U)
Tehran, Iran