Steve
I'll add the gpsvisualizer to the Therion wiki, as it
looks like a good way to get a smoothed ground profile over a cave centreline.
Just so I’m clear, did you just upload your therion generated kml file
here?

If you want to make a terrain model, then
TerrainTool is the way to go http://therion.speleo.sk/wiki/doku.php/contrib:terrainmodelling
Therions default pdf outputs
>I do have a bit of a problem in exporting to pdf,
and this may be me
missing something more fundamental in how survey/maps
are structured and
therion builds up the plot :
>When I just plot centreline data, I can see cave
centreline and the new
ground surface centreline for the complete cave
length.
If you do not explicitly select a survey or map
(ie you only have source data) and the source does not reference any scraps,
then default the entire centreline is plotted. As you observed above.
>When I include a single cave scrap, I no longer
see any centreline data outside this
single scrap. Is there a way to over-ride this
behaviour or alternatively how should I structure my survey/map objects to
avoid this?
And as soon as the source
references scraps, then only the scraps (and all of them) are exported.
To gain control over what is
output, you have to select surveys or maps to be exported. The easiest
way is to select is to use the Xtherion compiler window. You can only do
this after you have successfully compiled. Open the Surveys or Maps
window on the righthand side, and double-click the survey or map you want to
select. Xtherion adds the select statement to your thconfig file.

A little more explanation in
the thconfig templates on http://therion.speleo.sk/wiki/doku.php/templates
and in the Therion Book pg 56.
Bruce